The MKIV VR6 transmission removal is required to perform lower timing chain replacement, as well as upgrading or replacing the clutch. To fully understand how the clutch operates, there are some excellent articles in the manual transmission forum, but I will cover the basics before we begin. “When the tranny is out, it’s the perfect time to replace the thermostat on a VR6. That job is a real PITA when the tranny is in place.” Some very important cautions: PLEASE label all the connectors, parts, and bolts you remove from the vehicle. This will really help when you are ready to put it all back together. Also, some bolts are different lengths but look exactly the same as other bolts. Use whatever labeling scheme works for you, I used about 50 zip-loc bags and a magic marker and some paper. Start by removing some interior components. Remove the air filter. To do this, unscrew the two phillips head screws at the top of the air box cover. They will not come all the way out. Lift up on the top of the air box cover, and slide the air box off of the retaining clips. Lift up on the air filter to remove it from the air box. Disconnect the MAF air sensor. Insert a screwdriver blade in to the small hole at the end of the connector, pry up gently, and slide the connector off. Using a pair of Vise-grips, open and lock open the clamp connecting the air header to the air box. Leave the clamp opened for now.
Step by step transmission removal with illustration consist of 44 pages, available to download in pdf format.